User Guide
==========

Hint:If you want to run from raw reads from metagenome, please refer to Run from Raw Reads: Automated CAZyme and Glycan Substrate Annotation in Microbiomes: A Step-by-Step Protocol.
Otherwise, please refer to any following instruction



.. toctree::
   :maxdepth: 1

   quick_start
   run_from_protein_sequence
   run_with_CGCFinder
   run_from_raw_reads
   run_from_DNA_sequence
   run_from_raw_reads_ex
   run_from_raw_reads_pr