Run from DNA Sequence

This section provides a quick guide to running the run_dbcan tool suite with example data and explains the output files generated.

To run the dbCAN tool suite on the Escherichia coli Strain MG1655 example data, use the following command. The input file EscheriaColiK12MG1655.fna represents the FASTA format complete genome DNA sequence, and prok specifies that the organism is a prokaryote.

run_dbcan EscheriaColiK12MG1655.fna prok --out_dir output_EscheriaColiK12MG1655